Discovering and linking public omics data sets using the Omics Discovery Index

Using “omics” and integrated multi-omics approaches to guide

37 38 Running title: Using multi-omics for probiotic selection 39 40

Breast Cancer Prognostics Using Multi-Omics Data

Breast cancer affects one in eight women in America and is a leading cause of death from cancer worldwide. In the current study, four types of Omics data including copy number variation, gene expression, proteome and phosphoproteome were collected from seventy-seven breast cancer patients. Individual types of Omics data were used to separately construct predictive models to predict ten-year sur...

reviews Title : Visualising associations between paired ` omics ' data sets

A New Omics Data Resource of Pleurocybellaporrigens for Gene Discovery

BACKGROUND Pleurocybellaporrigens is a mushroom-forming fungus, which has been consumed as a traditional food in Japan. In 2004, 55 people were poisoned by eating the mushroom and 17 people among them died of acute encephalopathy. Since then, the Japanese government has been alerting Japanese people to take precautions against eating the P. porrigens mushroom. Unfortunately, despite efforts, th...

Clustering multilayer omics data using MuNCut

Background: Omics profiling is now a routine component of biomedical studies. In the analysis of omics data, clustering is an essential step and serves multiple purposes including for example revealing the unknown functionalities of omics units, assisting dimension reduction in outcome model building, and others. In the most recent omics studies, a prominent trend is to conduct multilayer profi...